The growing demand for clean-label products has intensified the search for natural and sustainable alternatives to synthetic colorants. Anthocyanins stand out as promising pigments due to their coloring capacity and bioactive properties. This study evaluated the efficiency of natural deep eutectic solvents (NADES) in extracting anthocyanins from agro-industrial by-products—molasses grass, black corn cobs, and grape skins—and their application in food and cosmetic matrices. A simplex-centroid mix