Experimentally validated deep learning control of protein aggregation
Vojtěch Cima·Jan Martinovič·Joan Planas-Iglesias·Ekaterina Grakova·Martin Havlásek·Madhumalar Subramanian·Michal Běloch·Martin Marek·Kateřina Slaninová·Jiřı́ Damborský·Zbyněk Prokop·David Bednář·Antonín Kunka
Abstract The identification of aggregation-prone regions in proteins and their suppression through mutations is a powerful strategy to enhance protein solubility and yield, significantly expanding their potential applications. Here, we developed and experimentally validated a deep neural network-based predictor, AggreProt, that generates a residue-level aggregation profile for protein sequences. The model outperformed or matched current state-of-the-art algorithms, as validated on two independen
