ReaGP: integrating residual units and attention mechanisms in convolution neural network for genomic prediction
Jing Li·Bo Zhu·Lingyang Xu·Yan Chen·Peng Guo·Haoran Ma·Zhida Zhao·Yuanxu Zhang·Yuanqing Wang·Junya Li·Xue Gao·Lupei Zhang·Zezhao Wang·Huijiang Gao
We introduced a novel deep learning method for genomic prediction, which integrates residual units, attention mechanisms and frequency-encoded genomic data. Comprehensive evaluation on pig, dairy cow, Huaxi cattle, wheat and rice datasets demonstrated that ReaGP was a promising tool for most traits. Thus, ReaGP could be considered as an efficient deep learning method for genomic prediction in farm animals and crops. The source code in this study is available at https://github.com/LiJing5467/ReaG
